Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 10 threads; openjdk version "11.0.11" 2021-04-20; /Data/UserData/FairWind/Ya.Cloud/core/pipeline/scripts/../juicer/scripts/juicer.sh -t 10 -D /Data/UserData/FairWind/Ya.Cloud/core/pipeline/scripts/../juicer -g mm10 -z /Data/DataBases/mm10/mm10_canonic.fa -p /Data/DataBases/mm10/mm10_canonic.chrom.sizes -s DpnII -y /Data/UserData/FairWind/Ya.Cloud/core/pipeline/data/restriction_sites/RestrictionSites_DpnII_mm10.txt -d /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5855100-SRR5855101/__temp__                                                                                                                                                                                                                                                                                                                                                                                                                                                  
Sequenced Read Pairs:  124,147,940
 Normal Paired: 103,630,620 (83.47%)
 Chimeric Paired: 4,010 (0.00%)
 Chimeric Ambiguous: 8,143 (0.01%)
 Unmapped: 20,505,167 (16.52%)
 Ligation Motif Present: 16,148 (0.01%)
Alignable (Normal+Chimeric Paired): 103,634,630 (83.48%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2021-09-03T12:44:57,736]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 90,824,312 (73.16%)
PCR Duplicates: 12,810,318 (10.32%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 383,890,933
Intra-fragment Reads: 12,994,607 (10.47% / 14.31%)
Below MAPQ Threshold: 16,733,786 (13.48% / 18.42%)
Hi-C Contacts: 61,095,919 (49.21% / 67.27%)
 Ligation Motif Present: 10,257  (0.01% / 0.01%)
 3' Bias (Long Range): 50% - 50%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 12,445,868  (10.03% / 13.70%)
Intra-chromosomal: 48,650,051  (39.19% / 53.57%)
Short Range (<20Kb): 11,634,473  (9.37% / 12.81%)
Long Range (>20Kb): 37,015,555  (29.82% / 40.76%)